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Creators/Authors contains: "Yi, Ming"

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  1. Free, publicly-accessible full text available July 2, 2026
  2. Abstract This paper presents a virtual patient generator (VPG) intended to be used for preclinical in silico evaluation of autonomous vasopressor administration algorithms in the setting of experimentally induced vasoplegia. Our VPG consists of two main components: (i) a mathematical model that replicates physiological responses to experimental vasoplegia (induced by sodium nitroprusside (SNP)) and vasopressor resuscitation via phenylephrine (PHP) and (ii) a parameter vector sample generator in the form of a multidimensional probability density function (PDF) using which the parameters characterizing the mathematical model can be sampled. We developed and validated a mathematical model capable of predicting physiological responses to the administration of SNP and PHP. Then, we developed a parameter vector sample generator using a collective variational inference method. In a blind testing, the VPG developed by combining the two could generate a large number of realistic virtual patients (VPs), which could simulate physiological responses observed in all the experiments: on the average, 98.1% and 74.3% of the randomly generated VPs were physiologically legitimate and adequately replicated the test subjects, respectively, and 92.4% of the experimentally observed responses could be covered by the envelope formed by the subject-replicating VPs. In sum, the VPG developed in this paper may be useful for preclinical in silico evaluation of autonomous vasopressor administration algorithms. 
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    Free, publicly-accessible full text available May 1, 2026
  3. We report an iridium-catalysed stereoselective cyclisation of aryl alkynes with tethered esters and imides to give silyl-protectedO,O- andN,O-acetals. 
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    Free, publicly-accessible full text available January 1, 2026
  4. Abstract Enantioenriched propargylic and allenic derivatives of silicon, germanium, and tin are versatile building blocks for stereoselective synthesis. Consequently, considerable efforts toward their efficient and selective synthesis have been made, both through classical approaches for chirality transfer and catalytic enantioselective strategies that employ the latest developments in transition metal catalysis, organocatalysis, and photoredox catalysis. In this review, we survey broadly applicable synthetic strategies and discuss the scope and mechanistic details for specific protocols that afford these compounds in a regio‐ and stereoselective manner. 
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  5. Two-dimensional (2D) kagome lattice metals are interesting because their corner sharing triangle structure enables a wide array of electronic and magnetic phenomena. Recently, post-growth annealing is shown to both suppress charge density wave (CDW) order and establish long-range CDW with the ability to cycle between states repeatedly in the kagome antiferromagnet FeGe. Here we perform transport, neutron scattering, scanning transmission electron microscopy (STEM), and muon spin rotation (μSR) experiments to unveil the microscopic mechanism of the annealing process and its impact on magneto-transport, CDW, and magnetism in FeGe. Annealing at 560 °C creates uniformly distributed Ge vacancies, preventing the formation of Ge-Ge dimers and thus CDW, while 320 °C annealing concentrates vacancies into stoichiometric FeGe regions with long-range CDW. The presence of CDW order greatly affects the anomalous Hall effect, incommensurate magnetic order, and spin-lattice coupling in FeGe, placing FeGe as the only kagome lattice material with tunable CDW and magnetic order. 
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    Free, publicly-accessible full text available April 7, 2026
  6. A facile on-line SPE-LC-MS/MS method for quantification of nucleobases and nucleosides in urine and saliva. 
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  7. Abstract We present the first long-read de novo assembly and annotation of the luna moth (Actias luna) and provide the full characterization of heavy chain fibroin (h-fibroin), a long and highly repetitive gene (>20 kb) essential in silk fiber production. There are >160,000 described species of moths and butterflies (Lepidoptera), but only within the last 5 years have we begun to recover high-quality annotated whole genomes across the order that capture h-fibroin. Using PacBio HiFi reads, we produce the first high-quality long-read reference genome for this species. The assembled genome has a length of 532 Mb, a contig N50 of 16.8 Mb, an L50 of 14 contigs, and 99.4% completeness (BUSCO). Our annotation using Bombyx mori protein and A. luna RNAseq evidence captured a total of 20,866 genes at 98.9% completeness with 10,267 functionally annotated proteins and a full-length h-fibroin annotation of 2,679 amino acid residues. 
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